Marc Kirchner
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Proteome scale characterization of human S-acylated proteins in lipid raft-enriched and non-raft membranes
W Yang, D Di Vizio, M Kirchner, H Steen, MR Freeman
Molecular & Cellular Proteomics 9 (1), 54-70, 2010
Robust prediction of the MASCOT score for an improved quality assessment in mass spectrometric proteomics
T Koenig, BH Menze, M Kirchner, F Monigatti, KC Parker, T Patterson, ...
Journal of proteome research 7 (9), 3708-3717, 2008
Concise representation of mass spectrometry images by probabilistic latent semantic analysis
M Hanselmann, M Kirchner, BY Renard, ER Amstalden, K Glunde, ...
Analytical chemistry 80 (24), 9649-9658, 2008
Toward digital staining using imaging mass spectrometry and random forests
M Hanselmann, U Kothe, M Kirchner, BY Renard, ER Amstalden, ...
Journal of proteome research 8 (7), 3558-3567, 2009
NITPICK: peak identification for mass spectrometry data
BY Renard, M Kirchner, H Steen, JAJ Steen, FA Hamprecht
BMC bioinformatics 9, 1-16, 2008
Life cycle stage-resolved proteomic analysis of the excretome/secretome from Strongyloides ratti—identification of stage-specific proteases
H Soblik, AE Younis, M Mitreva, BY Renard, M Kirchner, F Geisinger, ...
Molecular & Cellular Proteomics 10 (12), 2011
Different phosphorylation states of the anaphase promoting complex in response to antimitotic drugs: a quantitative proteomic analysis
JAJ Steen, H Steen, A Georgi, K Parker, M Springer, M Kirchner, ...
Proceedings of the National Academy of Sciences 105 (16), 6069-6074, 2008
When less can yield more–computational preprocessing of MS/MS spectra for peptide identification
BY Renard, M Kirchner, F Monigatti, AR Ivanov, J Rappsilber, D Winter, ...
Proteomics 9 (21), 4978-4984, 2009
Co‐regulation proteomics reveals substrates and mechanisms of APC/C‐dependent degradation
SA Singh, D Winter, M Kirchner, R Chauhan, S Ahmed, N Ozlu, A Tzur, ...
The EMBO journal 33 (4), 385-399, 2014
mz5: space-and time-efficient storage of mass spectrometry data sets
M Wilhelm, M Kirchner, JAJ Steen, H Steen
Molecular & Cellular Proteomics 11 (1), 2012
Neo: Generalizing confusion matrix visualization to hierarchical and multi-output labels
J Görtler, F Hohman, D Moritz, K Wongsuphasawat, D Ren, R Nair, ...
Proceedings of the 2022 CHI Conference on Human Factors in Computing Systems …, 2022
SIMA: simultaneous multiple alignment of LC/MS peak lists
B Voss, M Hanselmann, BY Renard, MS Lindner, U Köthe, M Kirchner, ...
Bioinformatics 27 (7), 987-993, 2011
Deuteration distribution estimation with improved sequence coverage for HX/MS experiments
X Lou, M Kirchner, BY Renard, U Köthe, S Boppel, C Graf, CT Lee, ...
Bioinformatics 26 (12), 1535-1541, 2010
Overcoming species boundaries in peptide identification with Bayesian information criterion-driven error-tolerant peptide search (BICEPS)
BY Renard, B Xu, M Kirchner, F Zickmann, D Winter, S Korten, NW Brattig, ...
Molecular & cellular proteomics 11 (7), M111. 014167-1-M111. 014167-12, 2012
amsrpm: Robust point matching for retention time aligment of lc/ms data with r
M Kirchner, B Saussen, H Steen, JAJ Steen, FA Hamprecht
Journal of Statistical Software 18, 1-12, 2007
An in-depth comparison of the male pediatric and adult urinary proteomes
JW Froehlich, AR Vaezzadeh, M Kirchner, AC Briscoe, O Hofmann, ...
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (5), 1044-1050, 2014
Estimating the confidence of peptide identifications without decoy databases
BY Renard, W Timm, M Kirchner, JAJ Steen, FA Hamprecht, H Steen
Analytical chemistry 82 (11), 4314-4318, 2010
A practical guide to the FLEXIQuant method
S Singh, M Kirchner, JA Steen, H Steen
Quantitative Methods in Proteomics, 295-319, 2012
Automated detection and analysis of bimodal isotope peak distributions in H/D exchange mass spectrometry using HeXicon
A Kreshuk, M Stankiewicz, X Lou, M Kirchner, FA Hamprecht, MP Mayer
International journal of mass spectrometry 302 (1-3), 125-131, 2011
Design and validation of a high-throughput matrix-assisted laser desorption ionization time-of-flight mass spectrometry method for quantification of hepcidin in human plasma
DS Anderson, M Kirchner, M Kellogg, LA Kalish, JY Jeong, G Vanasse, ...
Analytical chemistry 83 (21), 8357-8362, 2011
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Articles 1–20