Mattias Rydenfelt
Mattias Rydenfelt
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The transcription factor titration effect dictates level of gene expression
RC Brewster, FM Weinert, HG Garcia, D Song, M Rydenfelt, R Phillips
Cell 156 (6), 1312-1323, 2014
Classification of gene signatures for their information value and functional redundancy
L Cantini, L Calzone, L Martignetti, M Rydenfelt, N Blüthgen, E Barillot, ...
NPJ systems biology and applications 4 (1), 2, 2017
Scaling of gene expression with transcription-factor fugacity
FM Weinert, RC Brewster, M Rydenfelt, R Phillips, WK Kegel
Physical review letters 113 (25), 258101, 2014
Statistical mechanical model of coupled transcription from multiple promoters due to transcription factor titration
M Rydenfelt, RS Cox III, H Garcia, R Phillips
Physical Review E 89 (1), 012702, 2014
The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli
M Rydenfelt, HG Garcia, RS Cox III, R Phillips
PLoS one 9 (12), e114347, 2014
SPEED2: inferring upstream pathway activity from differential gene expression
M Rydenfelt, B Klinger, M Klünemann, N Blüthgen
Nucleic acids research 48 (W1), W307-W312, 2020
Oncogenic β-catenin and PIK3CA instruct network states and cancer phenotypes in intestinal organoids
P Riemer, M Rydenfelt, M Marks, K van Eunen, K Thedieck, BG Herrmann, ...
Journal of Cell Biology 216 (6), 1567-1577, 2017
The cancer cell proteome and transcriptome predicts sensitivity to targeted and cytotoxic drugs
M Rydenfelt, M Wongchenko, B Klinger, Y Yan, N Blüthgen
Life Science Alliance 2 (4), 2019
In vivo and in vitro consistency of thermodynamic models for transcription regulation
J Landman, RN Georgiev, M Rydenfelt, WK Kegel
Physical Review Research 1 (3), 033094, 2019
Tracking Price Trends Using User–Product Interaction Data From a Price Comparison Service
M Rydenfelt
International Conference on Applied Economics, 393-408, 2021
The Combinatorics of Transcriptional Regulation
M Rydenfelt
California Institute of Technology, 2014
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