New insights from the biogas microbiome by comprehensive genome-resolved metagenomics of nearly 1600 species originating from multiple anaerobic digesters S Campanaro, L Treu, LM Rodriguez-R, A Kovalovszki, RM Ziels, I Maus, ... Biotechnology for biofuels 13, 1-18, 2020 | 177* | 2020 |
Genome-centric metatranscriptomics analysis reveals the role of hydrochar in anaerobic digestion of waste activated sludge Z Shi, S Campanaro, M Usman, L Treu, A Basile, I Angelidaki, S Zhang, ... Environmental science & technology 55 (12), 8351-8361, 2021 | 75 | 2021 |
Insights into ammonia adaptation and methanogenic precursor oxidation by genome-centric analysis M Yan, L Treu, X Zhu, H Tian, A Basile, IA Fotidis, S Campanaro, ... Environmental science & technology 54 (19), 12568-12582, 2020 | 63 | 2020 |
Genomic comparison of Lactobacillus helveticus strains highlights probiotic potential A Fontana, I Falasconi, P Molinari, L Treu, A Basile, A Vezzi, ... Frontiers in Microbiology 10, 449552, 2019 | 54 | 2019 |
Advances in constraint-based modelling of microbial communities A Heinken, A Basile, I Thiele Current Opinion in Systems Biology 27, 100346, 2021 | 49 | 2021 |
Revealing metabolic mechanisms of interaction in the anaerobic digestion microbiome by flux balance analysis A Basile, S Campanaro, A Kovalovszki, G Zampieri, A Rossi, I Angelidaki, ... Metabolic Engineering 62, 138-149, 2020 | 45 | 2020 |
Genome-scale metabolic modeling of the human microbiome in the era of personalized medicine A Heinken, A Basile, J Hertel, C Thinnes, I Thiele Annual review of microbiology 75, 199-222, 2021 | 39 | 2021 |
Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation N De Bernardini, A Basile, G Zampieri, A Kovalovszki, B De Diego Diaz, ... Microbiome 10 (1), 117, 2022 | 30 | 2022 |
New insights into the variability of lactic acid production in Lachancea thermotolerans at the phenotypic and genomic level V Gatto, RL Binati, WJFL Junior, A Basile, L Treu, OGG de Almeida, ... Microbiological Research 238, 126525, 2020 | 27 | 2020 |
KEMET–A python tool for KEGG Module evaluation and microbial genome annotation expansion M Palù, A Basile, G Zampieri, L Treu, A Rossi, MS Morlino, S Campanaro Computational and Structural Biotechnology Journal 20, 1481-1486, 2022 | 15 | 2022 |
Analysis of the anaerobic digestion metagenome under environmental stresses stimulating prophage induction A Rossi, MS Morlino, M Gaspari, A Basile, P Kougias, L Treu, ... Microbiome 10 (1), 125, 2022 | 12 | 2022 |
Longitudinal flux balance analyses of a patient with episodic colonic inflammation reveals microbiome metabolic dynamics A Basile, A Heinken, J Hertel, L Smarr, W Li, L Treu, G Valle, ... Gut microbes 15 (1), 2226921, 2023 | 11* | 2023 |
Large-scale sequencing and comparative analysis of oenological Saccharomyces cerevisiae strains supported by nanopore refinement of key genomes A Basile, F De Pascale, F Bianca, A Rossi, M Frizzarin, N De Bernardini, ... Food Microbiology 97, 103753, 2021 | 11 | 2021 |
Modelling of microbial interactions in anaerobic digestion: From black to glass box A Basile, G Zampieri, A Kovalovszki, B Karkaria, L Treu, KR Patil, ... Current Opinion in Microbiology 75, 102363, 2023 | 6 | 2023 |
Microbiome structure in biofilms from a volcanic island in Maritime Antarctica investigated by genome-centric metagenomics and metatranscriptomics VB Centurion, S Campanaro, A Basile, L Treu, VM Oliveira Microbiological Research 265, 127197, 2022 | 5 | 2022 |
APOLLO: A genome-scale metabolic reconstruction resource of 247,092 diverse human microbes spanning multiple continents, age groups, and body sites A Heinken, TO Hulshof, B Nap, F Martinelli, A Basile, A O'Brolchain, ... bioRxiv, 2023 | 4 | 2023 |
Integrating metagenomic binning with flux balance analysis to unravel syntrophies in anaerobic CO2 methanation. Microbiome. 2022; 10: 117 N De Bernardini, A Basile, G Zampieri, A Kovalovszki, B De Diego Diaz, ... | 4 | |
A unified compendium of prokaryotic and viral genomes from over 300 anaerobic digestion microbiomes VB Centurion, A Rossi, E Orellana, G Ghiotto, B Kakuk, MS Morlino, ... Environmental Microbiome 19 (1), 1, 2024 | 3 | 2024 |
A new metabolic model of Drosophila melanogaster and the integrative analysis of Parkinson’s disease MF Cesur, A Basile, KR Patil, T Çakır Life Science Alliance 6 (8), 2023 | 1 | 2023 |
NEMETEX: a Python software for the visualisation of the network of metabolic exchanges M Palamin, A Frisinghelli, E Offer, G Zampieri, A Basile, S Campanaro bioRxiv, 2022.10. 19.492777, 2022 | | 2022 |