Dr Dimitrios Vlachakis

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S KossidaProfessor of BioinformaticsVerified email at igh.cnrs.fr
George P. ChrousosProfessor, School of Medicine, National and Kapodistrian University of AthensVerified email at med.uoa.gr
FLORA BACOPOULOUAssociate Professor, UNESCO Chair Adolescent Health Care, School of Medicine, National and Kapodistrian University of Athens, GreeceVerified email at med.uoa.gr
Dr. Louis Papageorgiou, BSc, MSc, PhDAUA / Department of Biotechnology, UOA & BRFAAVerified email at bioacademy.gr
E PapakonstantinouAgricultural University of AthensVerified email at aua.gr
Vasileios MegalooikonomouProfessor of Computer Engineering and Informatics, University of PatrasVerified email at ceid.upatras.gr
Efthimiadou, AHellenic Agricultural Organization DEMETER, Soil and Water Research InstituteVerified email at swri.gr
Spyridon Champeris TsanirasPostdoctoral Fellow at Cold Spring Harbor Laboratory; Editor of Journal of Molecular BiochemistryVerified email at cshl.edu
Evangelia CharmandariProfessor of Pediatric and Adolescent Endocrinology, National and Kapodistrian University of AthensVerified email at med.uoa.gr
Nikolaos LabrouProfessor Agricultural University of athensVerified email at aua.gr
AMALIA SERTEDAKINATIONAL AND KAPODISTRIAN UNIVERSITY, MEDICAL SCHOOLVerified email at med.uoa.gr
Andrea BrancaleCardiff UniversityVerified email at cardiff.ac.uk
George N. GoulielmosProfessor of Human Molecular Genetics, Medical School of CreteVerified email at uoc.gr
Elena BencurovaUniversity of WürzburgVerified email at uni-wuerzburg.de
Demetrios SpandidosProfessor Emeritus, Medical School, University of Crete, Heraklion, GreeceVerified email at spandidos-publications.com
Ioulia KokkaNational and Kapodistrian University of Athens · Division of PsychiatryVerified email at med.uoa.gr
Panagiotis VlamosProfessor of Computer Science, Ionian UniversityVerified email at ionio.gr
Nikolaos KatseniosAgricultural University of AthensVerified email at aua.gr
Evangelia I. Zacharaki, Asst. ScientistDep. of Radiation Oncology, University of Miami, USAVerified email at miami.edu
Christina Kanaka GantenbeinProfessor of Pediatric and Pediatric Endocrinology, National and Kapodistrian University AthensVerified email at med.uoa.gr

Dr Dimitrios Vlachakis

Professor / Reader, Agricultural University of Athens

Verified email at aua.gr - Homepage

Genetics Epigenetics Bioinformatics Drug Design Precision Medicine


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Current state-of-the-art molecular dynamics methods and applications D Vlachakis, E Bencurova, N Papangelopoulos, S Kossida Advances in protein chemistry and structural biology 94, 269-313, 2014	100	2014
Transcription factors and evolution: An integral part of gene expression T Mitsis, A Efthimiadou, F Bacopoulou, D Vlachakis, GP Chrousos, ... World Academy of Sciences Journal 2 (1), 3-8, 2020	92	2020
EnzyNet: enzyme classification using 3D convolutional neural networks on spatial representation A Amidi, S Amidi, D Vlachakis, V Megalooikonomou, N Paragios, ... PeerJ 6, e4750, 2018	80	2018
Genomic big data hitting the storage bottleneck L Papageorgiou, P Eleni, S Raftopoulou, M Mantaiou, ... EMBnet. journal 24, 2018	63	2018
Discovery of a novel HCV helicase inhibitor by a de novo drug design approach S Kandil, S Biondaro, D Vlachakis, AC Cummins, A Coluccia, C Berry, ... Bioorganic & medicinal chemistry letters 19 (11), 2935-2937, 2009	60	2009
Competitive inhibition of human poly (A)-specific ribonuclease (PARN) by synthetic fluoro-pyranosyl nucleosides NAA Balatsos, D Vlachakis, P Maragozidis, S Manta, D Anastasakis, ... Biochemistry 48 (26), 6044-6051, 2009	57	2009
A novel point mutation of the human glucocorticoid receptor gene causes primary generalized glucocorticoid resistance through impaired interaction with the LXXLL motif of the … NC Nicolaides, ML Roberts, T Kino, G Braatvedt, DE Hurt, E Katsantoni, ... The Journal of Clinical Endocrinology & Metabolism 99 (5), E902-E907, 2014	53	2014
Statistical and machine learning techniques in human microbiome studies: contemporary challenges and solutions I Moreno-Indias, L Lahti, M Nedyalkova, I Elbere, G Roshchupkin, ... Frontiers in microbiology 12, 277, 2021	47	2021
State-of-the-art technology in modern computer-aided drug design GA Dalkas, D Vlachakis, D Tsagkrasoulis, A Kastania, S Kossida Briefings in bioinformatics 14 (6), 745-752, 2013	47	2013
Gromita: a fully integrated graphical user interface to gromacs 4 D Sellis, D Vlachakis, M Vlassi Bioinformatics and biology insights 3, BBI. S3207, 2009	45	2009
An updated evolutionary study of Flaviviridae NS3 helicase and NS5 RNA-dependent RNA polymerase reveals novel invariable motifs as potential pharmacological targets L Papageorgiou, S Loukatou, K Sofia, D Maroulis, D Vlachakis Molecular BioSystems 12 (7), 2080-2093, 2016	43	2016
STING orchestrates the crosstalk between polyunsaturated fatty acid metabolism and inflammatory responses IK Vila, H Chamma, A Steer, M Saccas, C Taffoni, E Turtoi, LS Reinert, ... Cell Metabolism 34 (1), 125-139. e8, 2022	42	2022
A holistic evolutionary and structural study of flaviviridae provides insights into the function and inhibition of HCV helicase D Vlachakis, VL Koumandou, S Kossida PeerJ 1, e74, 2013	40	2013
Phosphorylation of the arginine/serine repeats of lamin B receptor by SRPK1—Insights from molecular dynamics simulations D Sellis, V Drosou, D Vlachakis, N Voukkalis, T Giannakouros, M Vlassi Biochimica et Biophysica Acta (BBA)-General Subjects 1820 (1), 44-55, 2012	37	2012
Introducing Drugster: a comprehensive and fully integrated drug design, lead and structure optimization toolkit D Vlachakis, D Tsagrasoulis, V Megalooikonomou, S Kossida Bioinformatics 29 (1), 126-128, 2013	36	2013
Evaluation of plant growth promoting bacteria strains on growth, yield and quality of industrial tomato N Katsenios, V Andreou, P Sparangis, N Djordjevic, M Giannoglou, ... Microorganisms 9 (10), 2099, 2021	34	2021
Functional toll-like receptor 9 expression and CXCR3 ligand release in pulmonary sarcoidosis J Schnerch, A Prasse, D Vlachakis, KL Schuchardt, DV Pechkovsky, ... American journal of respiratory cell and molecular biology 55 (5), 749-757, 2016	32	2016
Molecular dynamics simulations through GPU video games technologies S Loukatou, L Papageorgiou, P Fakourelis, A Filntisi, E Polychronidou, ... Journal of molecular biochemistry 3 (2), 64, 2014	32	2014
Modelling and mutational evidence identify the substrate binding site and functional elements in APC amino acid transporters I Vangelatos, D Vlachakis, V Sophianopoulou, G Diallinas Molecular membrane biology 26 (5-7), 356-370, 2009	32	2009
Molecular mechanisms of the novel coronavirus SARS-CoV-2 and potential anti-COVID19 pharmacological targets since the outbreak of the pandemic D Vlachakis, E Papakonstantinou, T Mitsis, K Pierouli, I Diakou, ... Food and Chemical Toxicology 146, 111805, 2020	31	2020

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