Wonpil Im
Wonpil Im
Presidential Endowed Chair and Professor of Biological Sciences and Chemistry, Lehigh University
Verified email at - Homepage
Cited by
Cited by
CHARMM: the biomolecular simulation program
BR Brooks, CL Brooks III, AD Mackerell Jr, L Nilsson, RJ Petrella, B Roux, ...
Journal of computational chemistry 30 (10), 1545-1614, 2009
CHARMM‐GUI: a web‐based graphical user interface for CHARMM
S Jo, T Kim, VG Iyer, W Im
Journal of computational chemistry 29 (11), 1859-1865, 2008
CHARMM-GUI input generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM simulations using the CHARMM36 additive force field
J Lee, X Cheng, S Jo, AD MacKerell, JB Klauda, W Im
Biophysical journal 110 (3), 641a, 2016
CHARMM‐GUI Membrane Builder toward realistic biological membrane simulations
EL Wu, X Cheng, S Jo, H Rui, KC Song, EM Dávila‐Contreras, Y Qi, J Lee, ...
Journal of computational chemistry 35 (27), 1997-2004, 2014
CHARMM-GUI Membrane Builder for mixed bilayers and its application to yeast membranes
S Jo, JB Lim, JB Klauda, W Im
Biophysical journal 97 (1), 50-58, 2009
Automated builder and database of protein/membrane complexes for molecular dynamics simulations
S Jo, T Kim, W Im
PloS one 2 (9), e880, 2007
Generalized born model with a simple smoothing function
W Im, MS Lee, CL Brooks III
Journal of computational chemistry 24 (14), 1691-1702, 2003
Performance comparison of generalized born and Poisson methods in the calculation of electrostatic solvation energies for protein structures
M Feig, A Onufriev, MS Lee, W Im, DA Case, CL Brooks III
Journal of computational chemistry 25 (2), 265-284, 2004
Continuum solvation model: computation of electrostatic forces from numerical solutions to the Poisson-Boltzmann equation
W Im, D Beglov, B Roux
Computer physics communications 111 (1-3), 59-75, 1998
Theoretical and computational models of biological ion channels
B Roux, T Allen, S Berneche, W Im
Quarterly reviews of biophysics 37 (1), 15-103, 2004
An implicit membrane generalized born theory for the study of structure, stability, and interactions of membrane proteins
W Im, M Feig, CL Brooks
Biophysical journal 85 (5), 2900-2918, 2003
Ion permeation and selectivity of OmpF porin: a theoretical study based on molecular dynamics, Brownian dynamics, and continuum electrodiffusion theory
W Im, B Roux
Journal of molecular biology 322 (4), 851-869, 2002
Balancing solvation and intramolecular interactions: toward a consistent generalized Born force field
J Chen, W Im, CL Brooks
Journal of the American Chemical Society 128 (11), 3728-3736, 2006
CHARMM-GUI Membrane Builder for Complex Biological Membrane Simulations with Glycolipids and Lipoglycans
J Lee, DS Patel, J Stĺhle, SJ Park, NR Kern, S Kim, J Lee, X Cheng, ...
Journal of chemical theory and computation 15 (1), 775-786, 2018
CHARMM-GUI martini maker for coarse-grained simulations with the martini force field
Y Qi, HI Ingólfsson, X Cheng, J Lee, SJ Marrink, W Im
Journal of chemical theory and computation 11 (9), 4486-4494, 2015
CHARMM‐GUI ligand reader and modeler for CHARMM force field generation of small molecules
S Kim, J Lee, S Jo, CL Brooks III, HS Lee, W Im
Journal of computational chemistry 38 (21), 1879-1886, 2017
Ions and counterions in a biological channel: a molecular dynamics simulation of OmpF porin from Escherichia coli in an explicit membrane with 1 M KCl aqueous salt solution
W Im, B Roux
Journal of molecular biology 319 (5), 1177-1197, 2002
A grand canonical Monte Carlo–Brownian dynamics algorithm for simulating ion channels
W Im, S Seefeld, B Roux
Biophysical Journal 79 (2), 788-801, 2000
Generalized solvent boundary potential for computer simulations
W Im, S Berneche, B Roux
The Journal of Chemical Physics 114 (7), 2924-2937, 2001
Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study
HS Lee, Y Qi, W Im
Scientific reports 5 (1), 8926, 2015
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