| DisProt: intrinsic protein disorder annotation in 2020 A Hatos, B Hajdu-Soltész, AM Monzon, N Palopoli, L Álvarez, ... Nucleic acids research 48 (D1), D269-D276, 2020 | 256 | 2020 |
| Exploiting incoming and outgoing citations for improving Information Retrieval in the TREC 2015 Clinical Decision Support Track J Gobeill, A Gaudinat, P Ruch Proceedings of The 24th Text REtrieval Conference (TREC 2015), 2015 | 177 | 2015 |
| Using argumentation to extract key sentences from biomedical abstracts P Ruch, C Boyer, C Chichester, I Tbahriti, A Geissbühler, P Fabry, ... International journal of medical informatics 76 (2-3), 195-200, 2007 | 127 | 2007 |
| Automatic medical encoding with SNOMED categories P Ruch, J Gobeill, C Lovis, A Geissbühler BMC medical informatics and decision making 8, 1-8, 2008 | 121 | 2008 |
| The COMBREX project: design, methodology, and initial results BP Anton, YC Chang, P Brown, HP Choi, LL Faller, J Guleria, Z Hu, ... PLoS biology 11 (8), e1001638, 2013 | 69 | 2013 |
| Overview of the gene ontology task at BioCreative IV Y Mao, K Van Auken, D Li, CN Arighi, P McQuilton, GT Hayman, ... Database 2014, 2014 | 55 | 2014 |
| The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases SIB Swiss Institute of Bioinformatics Members Nucleic acids research 44 (D1), D27-D37, 2016 | 51 | 2016 |
| Building a transnational biosurveillance network using semantic web technologies: requirements, design, and preliminary evaluation D Teodoro, E Pasche, J Gobeill, S Emonet, P Ruch, C Lovis Journal of medical Internet research 14 (3), e2043, 2012 | 48 | 2012 |
| Report on the TREC 2003 Experiment: Genomic Track. P Ruch, F Ehrler, S Abdou, J Savoy TREC, 2004 | 39 | 2004 |
| SciLite: a platform for displaying text-mined annotations as a means to link research articles with biological data A Venkatesan, JH Kim, F Talo, M Ide-Smith, J Gobeill, J Carter, ... Wellcome open research 1, 25, 2017 | 37 | 2017 |
| Question answering for biology and medicine J Gobeill, E Patsche, D Theodoro, AL Veuthey, C Lovis, P Ruch 2009 9th International Conference on Information Technology and Applications …, 2009 | 35 | 2009 |
| Managing the data deluge: data-driven GO category assignment improves while complexity of functional annotation increases J Gobeill, E Pasche, D Vishnyakova, P Ruch Database 2013, bat041, 2013 | 33 | 2013 |
| Report on the TREC 2009 Experiments: Chemical IR Track. J Gobeill, D Teodoro, E Pasche, P Ruch TREC, 2009 | 32 | 2009 |
| Vocabulary-Driven Passage Retrieval for Question-Answering in Genomics. J Gobeill, I Tbahriti, F Ehrler, P Ruch TREC, 2007 | 32 | 2007 |
| From episodes of care to diagnosis codes: automatic text categorization for medico-economic encoding P Ruch, J Gobeill, I Tbahriti, A Geissbuehler AMIA Annual Symposium Proceedings 2008, 636, 2008 | 31 | 2008 |
| Biomedical data management: a proposal framework D Teodoro, R Choquet, E Pasche, J Gobeill, C Daniel, P Ruch, C Lovis Medical Informatics in a United and Healthy Europe, 175-179, 2009 | 30 | 2009 |
| Comparing a rule‐based versus statistical system for automatic categorization of MEDLINE documents according to biomedical specialty SM Humphrey, A Névéol, A Browne, J Gobeil, P Ruch, SJ Darmoni Journal of the American Society for Information Science and Technology 60 …, 2009 | 28 | 2009 |
| Automatic IPC encoding and novelty tracking for effective patent mining D Teodoro, J Gobeill, E Pasche, P Ruch, D Vishnyakova, C Lovis The 8th NTCIR Workshop Meeting on Evaluation of Information Access …, 2010 | 27 | 2010 |
| Application of text-mining for updating protein post-translational modification annotation in UniProtKB AL Veuthey, A Bridge, J Gobeill, P Ruch, JR McEntyre, L Bougueleret, ... BMC bioinformatics 14, 1-9, 2013 | 22 | 2013 |
| Deep question answering for protein annotation J Gobeill, A Gaudinat, E Pasche, D Vishnyakova, P Gaudet, A Bairoch, ... Database 2015, bav081, 2015 | 19 | 2015 |
