Rainer Breitling

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Eriko TakanoProfessor of Synthetic Biology, Manchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Marnix MedemaProfessor of Bioinformatics at Wageningen UniversityVerified email at wur.nl
ritsert jansenProfessor of Bioinformatics, Dean of Talent DevelopmentVerified email at rug.nl
Andris JankevicsBiomolecular Mass Spectrometry and Proteomics, Utrecht UniversityVerified email at uu.nl
David GilbertProfessor of Computer Science, Brunel UniversityVerified email at brunel.ac.uk
Richard ScheltemaChair of Structural Proteomics - University of LiverpoolVerified email at liverpool.ac.uk
Nigel ScruttonProfessor of Enzymology, Manchester Institute of Biotechnology (MIB) and School of ChemistryVerified email at manchester.ac.uk
Tilmann WeberProfessor / Associate Scientific Director @ DTU Biosustain, Technical University of DenmarkVerified email at biosustain.dtu.dk
Kai BlinSenior Researcher at the Novo Nordisk Foundation Center for BiosustainabilityVerified email at biosustain.dtu.dk
Patrick ArmengaudGlasgow, Amiens, Versailles, MontpellierVerified email at versailles.inra.fr
Pawel HerzykSenior Lecturer & Head of Sequencing, MCSB and Glasgow Polyomics at the University of GlasgowVerified email at glasgow.ac.uk
Darren CreekProfessor, Drug Delivery, Disposition & Dynamics, Monash Institute of PharmaceuticalVerified email at monash.edu
Pablo CarbonellUniversitat Politècnica de València, ai2 Institute, I2SysBio, CSICVerified email at upv.es
David George WatsonStrathclydeVerified email at strath.ac.uk
Yang Li, PhDProfessor of Computational Biology, Director of CiiM, Helmholtz Centre for Infection Research (HZI)Verified email at helmholtz-hzi.de
Adrian J JervisUniversity of ManchesterVerified email at manchester.ac.uk
Michael A FischbachStanford UniversityVerified email at fischbachgroup.org
Karl BurgessProfessor, University of EdinburghVerified email at ed.ac.uk
Cunyu YanManchester Institute of Biotechnology, University of ManchesterVerified email at manchester.ac.uk
Neil SwainstonEpoch BiodesignVerified email at epochbiodesign.com

Rainer Breitling

Professor of Systems Biology, Manchester Institute of Biotechnology, University of Manchester

Verified email at manchester.ac.uk - Homepage

Systems Biology Dynamic Modelling Metabolomics Transcriptomics Synthetic Biology


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antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences MH Medema, K Blin, P Cimermancic, V de Jager, P Zakrzewski, ... Nucleic Acids Research 39 (suppl 2), W339-W346, 2011	2113	2011
antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters T Weber, K Blin, S Duddela, D Krug, HU Kim, R Bruccoleri, SY Lee, ... Nucleic acids research 43 (W1), W237-W243, 2015	2070	2015
Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments R Breitling, P Armengaud, A Amtmann, P Herzyk FEBS letters 573 (1-3), 83-92, 2004	1832	2004
antiSMASH 4.0—improvements in chemistry prediction and gene cluster boundary identification K Blin, T Wolf, MG Chevrette, X Lu, CJ Schwalen, SA Kautsar, ... Nucleic acids research 45 (W1), W36-W41, 2017	1275	2017
antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers K Blin, MH Medema, D Kazempour, MA Fischbach, R Breitling, E Takano, ... Nucleic acids research 41 (W1), W204-W212, 2013	975	2013
Minimum information about a biosynthetic gene cluster MH Medema, R Kottmann, P Yilmaz, M Cummings, JB Biggins, K Blin, ... Nature chemical biology 11 (9), 625-631, 2015	900	2015
RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis F Hong, R Breitling, CW McEntee, BS Wittner, JL Nemhauser, J Chory Bioinformatics 22 (22), 2825-2827, 2006	871	2006
Mass appeal: metabolite identification in mass spectrometry-focused untargeted metabolomics WB Dunn, A Erban, RJM Weber, DJ Creek, M Brown, R Breitling, ... Metabolomics 9, 44-66, 2013	644	2013
The potassium-dependent transcriptome of Arabidopsis reveals a prominent role of jasmonic acid in nutrient signaling P Armengaud, R Breitling, A Amtmann Plant physiology 136 (1), 2556-2576, 2004	582	2004
C. elegans model identifies genetic modifiers of α-synuclein inclusion formation during aging TJ Van Ham, KL Thijssen, R Breitling, RMW Hofstra, RHA Plasterk, ... PLoS genetics 4 (3), e1000027, 2008	474	2008
Toward Global Metabolomics Analysis with Hydrophilic Interaction Liquid Chromatography–Mass Spectrometry: Improved Metabolite Identification by Retention Time Prediction DJ Creek, A Jankevics, R Breitling, DG Watson, MP Barrett, KEV Burgess Analytical chemistry 83 (22), 8703-8710, 2011	406	2011
Regulation of ubiquitin-binding proteins by monoubiquitination D Hoeller, N Crosetto, B Blagoev, C Raiborg, R Tikkanen, S Wagner, ... Nature cell biology 8 (2), 163-169, 2006	384	2006
Detecting sequence homology at the gene cluster level with MultiGeneBlast MH Medema, E Takano, R Breitling Molecular biology and evolution 30 (5), 1218-1223, 2013	379	2013
PeakML/mzMatch: a file format, Java library, R library, and tool-chain for mass spectrometry data analysis RA Scheltema, A Jankevics, RC Jansen, MA Swertz, R Breitling Analytical Chemistry-Columbus 83 (7), 2786, 2011	366	2011
IDEOM: an Excel interface for analysis of LC–MS-based metabolomics data DJ Creek, A Jankevics, KEV Burgess, R Breitling, MP Barrett Bioinformatics 28 (7), 1048-1049, 2012	361	2012
Mapping Determinants of Gene Expression Plasticity by Genetical Genomics in C. elegans Y Li, OA Alvarez, EW Gutteling, M Tijsterman, J Fu, JAG Riksen, ... PLoS genetics 2 (12), e222, 2006	338	2006
GeneRank: Using search engine technology for the analysis of microarray experiments M Julie, B Rainer, H Desmond, G David BMC Bioinformatics 6, 2005	330	2005
A comparison of meta-analysis methods for detecting differentially expressed genes in microarray experiments F Hong, R Breitling Bioinformatics 24 (3), 374-382, 2008	306	2008
System-wide molecular evidence for phenotypic buffering in Arabidopsis J Fu, JJB Keurentjes, H Bouwmeester, T America, FWA Verstappen, ... Nature genetics 41 (2), 166-167, 2009	294	2009
DiffCoEx: a simple and sensitive method to find differentially coexpressed gene modules BM Tesson, R Breitling, RC Jansen BMC bioinformatics 11, 1-9, 2010	272	2010

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