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Anuradha Wickramarachchi
Anuradha Wickramarachchi
Research Software Engineer, CSIRO, Australia
Verified email at csiro.au - Homepage
Title
Cited by
Cited by
Year
GraphBin: refined binning of metagenomic contigs using assembly graphs
V Mallawaarachchi, A Wickramarachchi, Y Lin
Bioinformatics 36 (11), 3307-3313, 2020
792020
MetaBCC-LR: metagenomics binning by coverage and composition for long reads
A Wickramarachchi, V Mallawaarachchi, V Rajan, Y Lin
Bioinformatics 36 (Supplement_1), i3-i11, 2020
262020
Managing complex workflows in bioinformatics: an interactive toolkit with gpu acceleration
A Welivita, I Perera, D Meedeniya, A Wickramarachchi, ...
IEEE transactions on nanobioscience 17 (3), 199-208, 2018
262018
Binning long reads in metagenomics datasets using composition and coverage information
A Wickramarachchi, Y Lin
Algorithms for Molecular Biology 17 (1), 14, 2022
222022
GraphBin2: refined and overlapped binning of metagenomic contigs using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
20th International Workshop on Algorithms in Bioinformatics, WABI 2020, 8, 2020
182020
Improving metagenomic binning results with overlapped bins using assembly graphs
VG Mallawaarachchi, AS Wickramarachchi, Y Lin
Algorithms for Molecular Biology 16, 1-18, 2021
162021
Dimensionality reduction for cluster identification in metagenomics using autoencoders
U Maduranga, K Wijegunarathna, S Weerasinghe, I Perera, ...
2020 20th International Conference on Advances in ICT for Emerging Regions …, 2020
112020
Experiential learning in bioinformatics–learner support for complex workflow modelling and analysis
V Mallawaarachchi, A Wickaramarachchi, A Weliwita, I Perera, ...
International Journal of Emerging Technologies in Learning 13 (12), 19-34, 2018
112018
LRBinner: binning long reads in metagenomics datasets
A Wickramarachchi, Y Lin
21st International Workshop on Algorithms in Bioinformatics (WABI 2021), 2021
82021
Metagenomics binning of long reads using read-overlap graphs
A Wickramarachchi, Y Lin
RECOMB International Workshop on Comparative Genomics, 260-278, 2022
72022
Efficient bioinformatics computations through gpu accelerated web services
V Mallawaarachchi, A Wickramarachchi, A Welivita, I Perera, ...
Proceedings of the 2nd International Conference on Algorithms, Computing and …, 2018
72018
GraphPlas: refined classification of plasmid sequences using assembly graphs
A Wickramarachchi, Y Lin
IEEE/ACM Transactions on Computational Biology and Bioinformatics 19 (1), 57-67, 2021
62021
Alignment-free whole genome comparison using k-mer forests
G Gamage, N Gimhana, A Wickramarachchi, V Mallawaarachchi, I Perera
2019 19th International Conference on Advances in ICT for Emerging Regions …, 2019
52019
Future-proofing genomic data and consent management: a comprehensive review of technology innovations
A Oliva, A Kaphle, R Reguant, LMF Sng, NA Twine, Y Malakar, ...
GigaScience 13, giae021, 2024
42024
Phylogenetic Tree Construction Using K-Mer Forest-Based Distance Calculation
G Gamage, N Gimhana, I Perera, S Bandara, T Pathirana, ...
International Association of Online Engineering, 2020
42020
A realtime monitoring platform for workflow subroutines
D Rathnayake, A Wickramarachchi, V Mallawaarachchi, D Meedeniya, ...
2018 18th International Conference on Advances in ICT for Emerging Regions …, 2018
42018
Resource aware task clustering for scientific workflow execution in high performance computing environments
A Weerasinghe, K Wijethunga, R Jayasekara, I Perera, ...
2020 IEEE 22nd International Conference on High Performance Computing and …, 2020
32020
Use of nomadic computing devices for storage synchronization
A Wickramarachchi, D Atapattu, P Wimalasiri, RM Arachchi, G Dias
International Conference on Information Networking (ICOIN), 2018, 673-678, 2018
32018
An adapter architecture for heterogeneous data processing in bioinformatics pipelines
D Lenadora, A Wickramarachchi, D Meedeniya, V Mallawaarachchi, ...
2019 Moratuwa Engineering Research Conference (MERCon), 692-697, 2019
22019
Enhanced student learning in proteomics-an interactive tool support for teaching workflows
A Wickramarachchi, V Mallawaarachchi, D Meedeniya, I Perera, ...
2018 IEEE International Conference on Teaching, Assessment, and Learning for …, 2018
22018
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Articles 1–20