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Aleksei Aksimentiev
Aleksei Aksimentiev
Verified email at illinois.edu - Homepage
Title
Cited by
Cited by
Year
Scalable molecular dynamics on CPU and GPU architectures with NAMD
JC Phillips, DJ Hardy, JDC Maia, JE Stone, JV Ribeiro, RC Bernardi, ...
The Journal of chemical physics 153 (4), 2020
18072020
Imaging α-hemolysin with molecular dynamics: ionic conductance, osmotic permeability, and the electrostatic potential map
A Aksimentiev, K Schulten
Biophysical journal 88 (6), 3745-3761, 2005
7642005
Microscopic kinetics of DNA translocation through synthetic nanopores
A Aksimentiev, JB Heng, G Timp, K Schulten
Biophysical journal 87 (3), 2086-2097, 2004
4542004
Slowing down DNA translocation through a nanopore in lithium chloride
SW Kowalczyk, DB Wells, A Aksimentiev, C Dekker
Nano letters 12 (2), 1038-1044, 2012
4412012
Sizing DNA using a nanometer-diameter pore
JB Heng, C Ho, T Kim, R Timp, A Aksimentiev, YV Grinkova, S Sligar, ...
Biophysical journal 87 (4), 2905-2911, 2004
4352004
Orientation discrimination of single-stranded DNA inside the α-hemolysin membrane channel
J Mathť, A Aksimentiev, DR Nelson, K Schulten, A Meller
Proceedings of the National Academy of Sciences 102 (35), 12377-12382, 2005
4252005
Water− silica force field for simulating nanodevices
ER Cruz-Chu, A Aksimentiev, K Schulten
The Journal of Physical Chemistry B 110 (43), 21497-21508, 2006
3812006
Electrical recognition of the twenty proteinogenic amino acids using an aerolysin nanopore
H Ouldali, K Sarthak, T Ensslen, F Piguet, P Manivet, J Pelta, ...
Nature biotechnology 38 (2), 176-181, 2020
3462020
Improved Parametrization of Li+, Na+, K+, and Mg2+ Ions for All-Atom Molecular Dynamics Simulations of Nucleic Acid Systems
J Yoo, A Aksimentiev
The journal of physical chemistry letters 3 (1), 45-50, 2012
3322012
Assessing graphene nanopores for sequencing DNA
DB Wells, M Belkin, J Comer, A Aksimentiev
Nano letters 12 (8), 4117-4123, 2012
3212012
The electromechanics of DNA in a synthetic nanopore
JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ...
Biophysical journal 90 (3), 1098-1106, 2006
2792006
Simulation of the electric response of DNA translocation through a semiconductor nanopore–capacitor
ME Gracheva, A Xiong, A Aksimentiev, K Schulten, G Timp, JP Leburton
Nanotechnology 17 (3), 622, 2006
2622006
Multiple rereads of single proteins at single–amino acid resolution using nanopores
H Brinkerhoff, ASW Kang, J Liu, A Aksimentiev, C Dekker
Science 374 (6574), 1509-1513, 2021
2512021
Stretching DNA using the electric field in a synthetic nanopore
JB Heng, A Aksimentiev, C Ho, P Marks, YV Grinkova, S Sligar, ...
Nano letters 5 (10), 1883-1888, 2005
2412005
The emerging landscape of single-molecule protein sequencing technologies
JA Alfaro, P Bohlšnder, M Dai, M Filius, CJ Howard, XF Van Kooten, ...
Nature methods 18 (6), 604-617, 2021
2392021
Modeling and simulation of ion channels
C Maffeo, S Bhattacharya, J Yoo, D Wells, A Aksimentiev
Chemical reviews 112 (12), 6250-6284, 2012
2382012
Detection of DNA sequences using an alternating electric field in a nanopore capacitor
G Sigalov, J Comer, G Timp, A Aksimentiev
Nano letters 8 (1), 56-63, 2008
2212008
Effects of cytosine modifications on DNA flexibility and nucleosome mechanical stability
TTM Ngo, J Yoo, Q Dai, Q Zhang, C He, A Aksimentiev, T Ha
Nature communications 7 (1), 10813, 2016
2092016
Deciphering ionic current signatures of DNA transport through a nanopore
A Aksimentiev
Nanoscale 2 (4), 468-483, 2010
2052010
Large-conductance transmembrane porin made from DNA origami
K Göpfrich, CY Li, M Ricci, SP Bhamidimarri, J Yoo, B Gyenes, ...
ACS nano 10 (9), 8207-8214, 2016
1962016
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