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John Wain
John Wain
Quadram Institute Biosciences
Verified email at jidc.org - Homepage
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Year
Performance comparison of benchtop high-throughput sequencing platforms
NJ Loman, RV Misra, TJ Dallman, C Constantinidou, SE Gharbia, J Wain, ...
Nature biotechnology 30 (5), 434-439, 2012
16192012
Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18
J Parkhill, G Dougan, KD James, NR Thomson, D Pickard, J Wain, ...
Nature 413 (6858), 848-852, 2001
14382001
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity
E Volz, V Hill, JT McCrone, A Price, D Jorgensen, O’Toole, J Southgate, ...
Cell 184 (1), 64-75. e11, 2021
8672021
A study of typhoid fever in five Asian countries: disease burden and implications for controls
RL Ochiai, CJ Acosta, MC Danovaro-Holliday, D Baiqing, ...
Bulletin of the world health organization 86 (4), 260-268, 2008
8072008
Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica
M Achtman, J Wain, FX Weill, S Nair, Z Zhou, V Sangal, MG Krauland, ...
PLoS pathogens 8 (6), e1002776, 2012
6362012
Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants
GC Langridge, MD Phan, DJ Turner, TT Perkins, L Parts, J Haase, ...
Genome research 19 (12), 2308-2316, 2009
6182009
High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi
KE Holt, J Parkhill, CJ Mazzoni, P Roumagnac, FX Weill, I Goodhead, ...
Nature genetics 40 (8), 987-993, 2008
5412008
MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island
PM Ashton, S Nair, T Dallman, S Rubino, W Rabsch, S Mwaigwisya, ...
Nature biotechnology 33 (3), 296-300, 2015
4522015
Salmonella typhi, the causative agent of typhoid fever, is approximately 50,000 years old
C Kidgell, U Reichard, J Wain, B Linz, M Torpdahl, G Dougan, M Achtman
Infection, Genetics and Evolution 2 (1), 39-45, 2002
4282002
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
CK Okoro, RA Kingsley, TR Connor, SR Harris, CM Parry, ...
Nature genetics 44 (11), 1215-1221, 2012
4062012
Quinolone-Resistant Salmonella typhi in Viet Nam: Molecular Basis of Resistance and Clinical Response to Treatment
J Wain, NTT Hoa, NT Chinh, H Vinh, MJ Everett, TS Diep, NPJ Day, ...
Clinical infectious diseases 25 (6), 1404-1410, 1997
4041997
Quantitation of bacteria in blood of typhoid fever patients and relationship between counts and clinical features, transmissibility, and antibiotic resistance
J Wain, TS Diep, VA Ho, AM Walsh, NTT Hoa, CM Parry, NJ White
Journal of clinical microbiology 36 (6), 1683-1687, 1998
3591998
Background document: the diagnosis, treatment and prevention of typhoid fever
World Health Organization
Geneva: World Health Organization, 2003
3022003
Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection
T Charalampous, GL Kay, H Richardson, A Aydin, R Baldan, C Jeanes, ...
Nature biotechnology 37 (7), 783-792, 2019
2932019
Antimicrobial Drug Resistance of Salmonella enterica Serovar Typhi in Asia and Molecular Mechanism of Reduced Susceptibility to the Fluoroquinolones
TT Chau, JI Campbell, CM Galindo, N Van Minh Hoang, TS Diep, ...
Antimicrobial agents and chemotherapy 51 (12), 4315-4323, 2007
2922007
International Spread of an Epidemic Population of Salmonella enterica Serotype Kentucky ST198 Resistant to Ciprofloxacin
S Le Hello, RS Hendriksen, B Doublet, I Fisher, EM Nielsen, JM Whichard, ...
Journal of Infectious Diseases 204 (5), 675-684, 2011
2832011
Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing
K Schmidt, S Mwaigwisya, LC Crossman, M Doumith, D Munroe, C Pires, ...
Journal of Antimicrobial Chemotherapy 72 (1), 104-114, 2016
2602016
Salmonella paratyphi A rates, Asia
RL Ochiai, XY Wang, L Von Seidlein, J Yang, ZA Bhutta, SK Bhattacharya, ...
Emerging infectious diseases 11 (11), 1764, 2005
2572005
Typhoid fever: pathogenesis and disease
D House, A Bishop, C Parry, G Dougan, J Wain
Current opinion in infectious diseases 14 (5), 573-578, 2001
2552001
Quantitation of bacteria in bone marrow from patients with typhoid fever: relationship between counts and clinical features
J Wain, PVB Bay, H Vinh, NM Duong, TS Diep, AL Walsh, CM Parry, ...
Journal of clinical microbiology 39 (4), 1571-1576, 2001
2542001
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