Shaun D. Jackman

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Inanc BirolGenome Sciences Centre, BC Cancer AgencyVerified email at bcgsc.ca
Steven JonesBC Cancer, Simon Fraser University, University of British ColumbiaVerified email at bcgsc.ca
RL WarrenGenome Sciences Centre, BC CancerVerified email at bcgsc.ca
Joerg BohlmannProfessor, Michael Smith Laboratories, University of British ColumbiaVerified email at msl.ubc.ca
Justin ChuDana-Farber Cancer InstituteVerified email at ds.dfci.harvard.edu
Anthony RaymondGenome Sciences Centre of the British Columbia Cancer AgencyVerified email at bcgsc.ca
Hamid MohamadiAmazon Web ServicesVerified email at amazon.com
Pawan K PandohTechnology Development, BC Cancer Genome Sciences CentreVerified email at bcgsc.ca
Lauren CoombeBC Cancer Genome Sciences CentreVerified email at bcgsc.ca
Richard A MooreMichael Smith Genome Sciences Centre, BC CancerVerified email at bcgsc.ca
Jean BousquetProfessor, Université Laval, Département des Sciences du bois et de la forêt, IBIS, CEFVerified email at sbf.ulaval.ca
Jared SimpsonOntario Institute for Cancer ResearchVerified email at oicr.on.ca
Gregory A TaylorMichael Smith Genome Sciences Centre at BC CancerVerified email at bcgsc.ca
Christopher I. Keeling, BSc, MSc, PhDLaurentian Forestry Centre, Canadian Forest Service, Natural Resources CanadaVerified email at canada.ca
Robin CoopeStaff Scientist, BC Cancer Genome Sciences CentreVerified email at bcgsc.ca
Kim WongWellcome Trust Sanger InstituteVerified email at sanger.ac.uk
S. Austin HammondOPAL Platform Lead, Global Institute for Food SecurityVerified email at gifs.ca
T. Roderick DockingExperimental Medicine Program, Department of Medicine, University of British ColumbiaVerified email at bcgsc.ca
Marco MarraBC Cancer Agency; University of British Columbia, Genome Sciences CentreVerified email at bcgsc.ca
Chen YangUniversity of British ColumbiaVerified email at bcgsc.ca

Shaun D. Jackman

10x Genomics

Verified email at 10xgenomics.com - Homepage

Computational Biology Bioinformatics


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ABySS: a parallel assembler for short read sequence data JT Simpson, K Wong, SD Jackman, JE Schein, SJM Jones, İ Birol Genome research 19 (6), 1117-1123, 2009	4277	2009
Frequent mutation of histone-modifying genes in non-Hodgkin lymphoma RD Morin, M Mendez-Lago, AJ Mungall, R Goya, KL Mungall, RD Corbett, ... Nature 476 (7360), 298-303, 2011	1931	2011
The genetic landscape of high-risk neuroblastoma TJ Pugh, O Morozova, EF Attiyeh, S Asgharzadeh, JS Wei, D Auclair, ... Nature genetics 45 (3), 279-284, 2013	1230	2013
De novo assembly and analysis of RNA-seq data G Robertson, J Schein, R Chiu, R Corbett, M Field, SD Jackman, ... Nature methods 7 (11), 909-912, 2010	1216	2010
Subgroup-specific structural variation across 1,000 medulloblastoma genomes PA Northcott, DJH Shih, J Peacock, L Garzia, A Sorana Morrissy, ... Nature 488 (7409), 49-56, 2012	987	2012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013	810	2013
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter SD Jackman, BP Vandervalk, H Mohamadi, J Chu, S Yeo, SA Hammond, ... Genome research 27 (5), 768-777, 2017	655	2017
Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011	636	2011
De novo transcriptome assembly with ABySS I Birol, SD Jackman, CB Nielsen, JQ Qian, R Varhol, G Stazyk, RD Morin, ... Bioinformatics 25 (21), 2872-2877, 2009	521	2009
Assembling the 20 Gb white spruce (Picea glauca) genome from whole-genome shotgun sequencing data I Birol, A Raymond, SD Jackman, S Pleasance, R Coope, GA Taylor, ... Bioinformatics 29 (12), 1492-1497, 2013	453	2013
Concurrent CIC mutations, IDH mutations and 1p/19q loss distinguish oligodendrogliomas from other cancers S Yip, YS Butterfield, O Morozova, S Chittaranjan, MD Blough, J An, I Birol, ... The Journal of Pathology 226 (1), 7-16, 2012	349	2012
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest CI Keeling, MMS Yuen, NY Liao, T Roderick Docking, SK Chan, ... Genome biology 14, 1-20, 2013	310	2013
A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020	307	2020
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism RL Warren, CI Keeling, MMS Yuen, A Raymond, GA Taylor, ... The Plant Journal 83 (2), 189-212, 2015	239	2015
Sealer: a scalable gap-closing application for finishing draft genomes D Paulino, RL Warren, BP Vandervalk, A Raymond, SD Jackman, I Birol BMC bioinformatics 16, 1-8, 2015	166	2015
On the representation of de Bruijn graphs R Chikhi, A Limasset, S Jackman, JT Simpson, P Medvedev Research in Computational Molecular Biology 8394, 35-55, 2014	146	2014
BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters J Chu, S Sadeghi, A Raymond, SD Jackman, KM Nip, R Mar, ... Bioinformatics 30 (23), 3402-3404, 2014	121	2014
Whole genome duplication and enrichment of metal cation transporters revealed by de novo genome sequencing of extremely halotolerant black yeast Hortaea werneckii M Lenassi, C Gostinčar, S Jackman, M Turk, I Sadowski, C Nislow, ... PLoS One 8 (8), e71328, 2013	119	2013
Tigmint: correcting assembly errors using linked reads from large molecules SD Jackman, L Coombe, J Chu, RL Warren, BP Vandervalk, S Yeo, Z Xue, ... BMC bioinformatics 19, 1-10, 2018	111	2018
ABySS-Explorer: visualizing genome sequence assemblies CB Nielsen, SD Jackman, I Birol, SJM Jones IEEE Transactions on Visualization and Computer Graphics 15 (6), 881-888, 2009	110	2009

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