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Kai Zhu
Kai Zhu
Senior Director at BeiGene
Verified email at beigene.com
Title
Cited by
Cited by
Year
The VSGB 2.0 model: a next generation energy model for high resolution protein structure modeling
J Li, R Abel, K Zhu, Y Cao, S Zhao, RA Friesner
Proteins: Structure, Function, and Bioinformatics 79 (10), 2794-2812, 2011
8972011
Docking covalent inhibitors: a parameter free approach to pose prediction and scoring
K Zhu, KW Borrelli, JR Greenwood, T Day, R Abel, RS Farid, E Harder
Journal of chemical information and modeling 54 (7), 1932-1940, 2014
3842014
Antibody structure determination using a combination of homology modeling, energy‐based refinement, and loop prediction
K Zhu, T Day, D Warshaviak, C Murrett, R Friesner, D Pearlman
Proteins: Structure, Function, and Bioinformatics 82 (8), 1646-1655, 2014
2082014
Structure-based virtual screening approach for discovery of covalently bound ligands
D Toledo Warshaviak, G Golan, KW Borrelli, K Zhu, O Kalid
Journal of chemical information and modeling 54 (7), 1941-1950, 2014
1452014
Long loop prediction using the protein local optimization program
K Zhu, DL Pincus, S Zhao, RA Friesner
Proteins: Structure, Function, and Bioinformatics 65 (2), 438-452, 2006
1432006
Improved methods for side chain and loop predictions via the protein local optimization program: variable dielectric model for implicitly improving the treatment of …
K Zhu, MR Shirts, RA Friesner
Journal of Chemical Theory and Computation 3 (6), 2108-2119, 2007
1232007
Toward better refinement of comparative models: predicting loops in inexact environments
BD Sellers, K Zhu, S Zhao, RA Friesner, MP Jacobson
Proteins: Structure, Function, and Bioinformatics 72 (3), 959-971, 2008
1012008
Successful prediction of the intra-and extracellular loops of four G-protein-coupled receptors
DA Goldfeld, K Zhu, T Beuming, RA Friesner
Proceedings of the National Academy of Sciences 108 (20), 8275-8280, 2011
852011
Selection of Nanobodies that Block the Enzymatic and Cytotoxic Activities of the Binary Clostridium Difficile Toxin CDT
M Unger, AM Eichhoff, L Schumacher, M Strysio, S Menzel, C Schwan, ...
Scientific reports 5 (1), 7850, 2015
722015
Progress in super long loop prediction
S Zhao, K Zhu, J Li, RA Friesner
Proteins: Structure, Function, and Bioinformatics 79 (10), 2920-2935, 2011
512011
Assignment of polar states for protein amino acid residues using an interaction cluster decomposition algorithm and its application to high resolution protein structure modeling
X Li, MP Jacobson, K Zhu, S Zhao, RA Friesner
Proteins: Structure, Function, and Bioinformatics 66 (4), 824-837, 2007
482007
Multiscale Optimization of a Truncated Newton Minimization Algorithm and Application to Proteins and Protein− Ligand Complexes
K Zhu, MR Shirts, RA Friesner, MP Jacobson
Journal of Chemical Theory and Computation 3 (2), 640-648, 2007
452007
Ab initio structure prediction of the antibody hypervariable H3 loop
K Zhu, T Day
Proteins: Structure, Function, and Bioinformatics, 2012
372012
Cloning and characterization of rat spermatid protein SSP411: a thioredoxin‐like protein
HJ Shi, AZ Wu, M Santos, ZM Feng, L Huang, YM Chen, K Zhu, ...
Journal of andrology 25 (4), 479-493, 2004
272004
Loop prediction for a GPCR homology model: algorithms and results
DA Goldfeld, K Zhu, T Beuming, RA Friesner
Proteins: Structure, Function, and Bioinformatics 81 (2), 214-228, 2013
262013
Prediction of long loops with embedded secondary structure using the protein local optimization program
EB Miller, CS Murrett, K Zhu, S Zhao, DA Goldfeld, JH Bylund, ...
Journal of chemical theory and computation 9 (3), 1846-1864, 2013
162013
Induced-fit docking enables accurate free energy perturbation calculations in homology models
T Xu, K Zhu, A Beautrait, J Vendome, KW Borrelli, R Abel, RA Friesner, ...
Journal of Chemical Theory and Computation 18 (9), 5710-5724, 2022
112022
Modeling receptor flexibility in the structure-based design of KRASG12C inhibitors
K Zhu, C Li, KY Wu, C Mohr, X Li, B Lanman
Journal of Computer-Aided Molecular Design 36 (8), 591-604, 2022
62022
Reply to Nikiforovich et al.: Restoration of the loop regions of G-protein–coupled receptors
DA Goldfeld, K Zhu, T Beuming, RA Friesner
Proceedings of the National Academy of Sciences 108 (30), E342-E342, 2011
32011
Heterocyclic spiro compounds and methods of use
BA Lanman, A Banerjee, CHUM Margaret, D Dai, J Eshon, D Huang, ...
US Patent App. 18/032,548, 2024
2024
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