Serdal Kirmizialtin
Serdal Kirmizialtin
Assistant Professor
Verified email at - Homepage
Cited by
Cited by
How conformational dynamics of DNA polymerase select correct substrates: experiments and simulations
S Kirmizialtin, V Nguyen, KA Johnson, R Elber
Structure 20 (4), 618-627, 2012
Single-molecule electrophoresis of beta-hairpin peptides by electrical recordings and Langevin dynamics simulations.
CP Goodrich, S Kirmizialtin, BM Huyghues-Despointes, AP Zhu
J Phys Chem B 111 (13), 3332-3335, 2007
RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations
S Kirmizialtin, SA Pabit, SP Meisburger, L Pollack, R Elber
Biophysical journal 102 (4), 819-828, 2012
Revisiting and computing reaction coordinates with directional milestoning
S Kirmizialtin, R Elber
The journal of physical chemistry A 115 (23), 6137-6148, 2011
Computer simulations of the translocation and unfolding of a protein pulled mechanically through a pore
L Huang, S Kirmizialtin, DE Makarov
The Journal of chemical physics 123 (12), 124903, 2005
Topography of the free-energy landscape probed via mechanical unfolding of proteins
S Kirmizialtin, L Huang, DE Makarov
The Journal of chemical physics 122 (23), 234915, 2005
The ionic atmosphere around A-RNA: Poisson-Boltzmann and molecular dynamics simulations
S Kirmizialtin, ARJ Silalahi, R Elber, MO Fenley
Biophysical journal 102 (4), 829-838, 2012
Computational exploration of mobile ion distributions around RNA duplex
S Kirmizialtin, R Elber
The Journal of Physical Chemistry B 114 (24), 8207-8220, 2010
Translocation of a β-hairpin-forming peptide through a cylindrical tunnel
S Kirmizialtin, V Ganesan, DE Makarov
The Journal of chemical physics 121 (20), 10268-10277, 2004
Taming the topology of calix [4] arene-based 2D-covalent organic frameworks: interpenetrated vs noninterpenetrated frameworks and their selective removal of cationic dyes
B Garai, D Shetty, T Skorjanc, F Gándara, N Naleem, S Varghese, ...
Journal of the American Chemical Society 143 (9), 3407-3415, 2021
The in vitro selection world
K Jijakli, B Khraiwesh, W Fu, L Luo, A Alzahmi, J Koussa, ...
Methods 106, 3-13, 2016
The catalytic inactivation of the N-half of human hexokinase 2 and structural and biochemical characterization of its mitochondrial conformation
MH Nawaz, JC Ferreira, L Nedyalkova, H Zhu, C Carrasco-López, ...
Bioscience reports 38 (1), 2018
Polyelectrolyte properties of single stranded DNA measured using SAXS and single‐molecule FRET: Beyond the wormlike chain model
SP Meisburger, JL Sutton, H Chen, SA Pabit, S Kirmizialtin, R Elber, ...
Biopolymers 99 (12), 1032-1045, 2013
Redox‐Responsive Covalent Organic Nanosheets from Viologens and Calix [4] arene for Iodine and Toxic Dye Capture
T Skorjanc, D Shetty, SK Sharma, J Raya, H Traboulsi, DS Han, J Lalla, ...
Chemistry–A European Journal 24 (34), 8648-8655, 2018
Revealing the distinct folding phases of an RNA three-helix junction
A Plumridge, AM Katz, GD Calvey, R Elber, S Kirmizialtin, L Pollack
Nucleic acids research 46 (14), 7354-7365, 2018
Designed cell-penetrating peptide inhibitors of amyloid-beta aggregation and cytotoxicity
A Henning-Knechtel, S Kumar, C Wallin, S Król, SKTS Wärmländer, ...
Cell Reports Physical Science 1 (2), 100014, 2020
Calix [4] arene-based porous organic nanosheets
D Shetty, T Skorjanc, J Raya, SK Sharma, I Jahovic, K Polychronopoulou, ...
ACS applied materials & interfaces 10 (20), 17359-17365, 2018
Enzyme selectivity of HIV reverse transcriptase: conformations, ligands, and free energy partition
S Kirmizialtin, KA Johnson, R Elber
The Journal of Physical Chemistry B 119 (35), 11513-11526, 2015
Structure-guided DNA–DNA attraction mediated by divalent cations
XQ Amit Srivastava, Raju Timsina, Seung Heo, Sajeewa W Dewage, Serdal ...
Nucleic Acid Research 48 (13), 7018–7026, 2020
Cryo_fit: Democratization of flexible fitting for cryo-EM
DN Kim, NW Moriarty, S Kirmizialtin, PV Afonine, B Poon, OV Sobolev, ...
Journal of structural biology 208 (1), 1-6, 2019
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