| How conformational dynamics of DNA polymerase select correct substrates: experiments and simulations S Kirmizialtin, V Nguyen, KA Johnson, R Elber Structure 20 (4), 618-627, 2012 | 136 | 2012 |
| Single-molecule electrophoresis of beta-hairpin peptides by electrical recordings and Langevin dynamics simulations. CP Goodrich, S Kirmizialtin, BM Huyghues-Despointes, AP Zhu J Phys Chem B 111 (13), 3332-3335, 2007 | 105 | 2007 |
| RNA and its ionic cloud: solution scattering experiments and atomically detailed simulations S Kirmizialtin, SA Pabit, SP Meisburger, L Pollack, R Elber Biophysical journal 102 (4), 819-828, 2012 | 99 | 2012 |
| Revisiting and computing reaction coordinates with directional milestoning S Kirmizialtin, R Elber The journal of physical chemistry A 115 (23), 6137-6148, 2011 | 84 | 2011 |
| Computer simulations of the translocation and unfolding of a protein pulled mechanically through a pore L Huang, S Kirmizialtin, DE Makarov The Journal of chemical physics 123 (12), 124903, 2005 | 82 | 2005 |
| Topography of the free-energy landscape probed via mechanical unfolding of proteins S Kirmizialtin, L Huang, DE Makarov The Journal of chemical physics 122 (23), 234915, 2005 | 80 | 2005 |
| The ionic atmosphere around A-RNA: Poisson-Boltzmann and molecular dynamics simulations S Kirmizialtin, ARJ Silalahi, R Elber, MO Fenley Biophysical journal 102 (4), 829-838, 2012 | 75 | 2012 |
| Computational exploration of mobile ion distributions around RNA duplex S Kirmizialtin, R Elber The Journal of Physical Chemistry B 114 (24), 8207-8220, 2010 | 70 | 2010 |
| Translocation of a β-hairpin-forming peptide through a cylindrical tunnel S Kirmizialtin, V Ganesan, DE Makarov The Journal of chemical physics 121 (20), 10268-10277, 2004 | 59 | 2004 |
| Taming the topology of calix [4] arene-based 2D-covalent organic frameworks: interpenetrated vs noninterpenetrated frameworks and their selective removal of cationic dyes B Garai, D Shetty, T Skorjanc, F Gándara, N Naleem, S Varghese, ... Journal of the American Chemical Society 143 (9), 3407-3415, 2021 | 55 | 2021 |
| The in vitro selection world K Jijakli, B Khraiwesh, W Fu, L Luo, A Alzahmi, J Koussa, ... Methods 106, 3-13, 2016 | 55 | 2016 |
| The catalytic inactivation of the N-half of human hexokinase 2 and structural and biochemical characterization of its mitochondrial conformation MH Nawaz, JC Ferreira, L Nedyalkova, H Zhu, C Carrasco-López, ... Bioscience reports 38 (1), 2018 | 51 | 2018 |
| Polyelectrolyte properties of single stranded DNA measured using SAXS and single‐molecule FRET: Beyond the wormlike chain model SP Meisburger, JL Sutton, H Chen, SA Pabit, S Kirmizialtin, R Elber, ... Biopolymers 99 (12), 1032-1045, 2013 | 47 | 2013 |
| Redox‐Responsive Covalent Organic Nanosheets from Viologens and Calix [4] arene for Iodine and Toxic Dye Capture T Skorjanc, D Shetty, SK Sharma, J Raya, H Traboulsi, DS Han, J Lalla, ... Chemistry–A European Journal 24 (34), 8648-8655, 2018 | 43 | 2018 |
| Revealing the distinct folding phases of an RNA three-helix junction A Plumridge, AM Katz, GD Calvey, R Elber, S Kirmizialtin, L Pollack Nucleic acids research 46 (14), 7354-7365, 2018 | 39* | 2018 |
| Designed cell-penetrating peptide inhibitors of amyloid-beta aggregation and cytotoxicity A Henning-Knechtel, S Kumar, C Wallin, S Król, SKTS Wärmländer, ... Cell Reports Physical Science 1 (2), 100014, 2020 | 36 | 2020 |
| Calix [4] arene-based porous organic nanosheets D Shetty, T Skorjanc, J Raya, SK Sharma, I Jahovic, K Polychronopoulou, ... ACS applied materials & interfaces 10 (20), 17359-17365, 2018 | 36 | 2018 |
| Enzyme selectivity of HIV reverse transcriptase: conformations, ligands, and free energy partition S Kirmizialtin, KA Johnson, R Elber The Journal of Physical Chemistry B 119 (35), 11513-11526, 2015 | 31 | 2015 |
| Structure-guided DNA–DNA attraction mediated by divalent cations XQ Amit Srivastava, Raju Timsina, Seung Heo, Sajeewa W Dewage, Serdal ... Nucleic Acid Research 48 (13), 7018–7026, 2020 | 28 | 2020 |
| Cryo_fit: Democratization of flexible fitting for cryo-EM DN Kim, NW Moriarty, S Kirmizialtin, PV Afonine, B Poon, OV Sobolev, ... Journal of structural biology 208 (1), 1-6, 2019 | 28 | 2019 |
