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Jerome Baudry
Jerome Baudry
Ms. Pei-Ling Chan Endowed Chair and Professor. University of Alabama in Huntsville
Verified email at uah.edu - Homepage
Title
Cited by
Cited by
Year
Biasing reaction pathways with mechanical force
CR Hickenboth, JS Moore, SR White, NR Sottos, J Baudry, SR Wilson
Nature 446 (7134), 423-427, 2007
8612007
Steered molecular dynamics investigations of protein function
B Isralewitz, J Baudry, J Gullingsrud, D Kosztin, K Schulten
Journal of Molecular Graphics and Modelling 19 (1), 13-25, 2001
4272001
Ensemble docking in drug discovery
RE Amaro, J Baudry, J Chodera, ÷ Demir, JA McCammon, Y Miao, ...
Biophysical journal 114 (10), 2271-2278, 2018
3892018
Human TLRs 10 and 1 share common mechanisms of innate immune sensing but not signaling
Y Guan, DRE Ranoa, S Jiang, SK Mutha, X Li, J Baudry, RI Tapping
The Journal of Immunology 184 (9), 5094-5103, 2010
3242010
Structural and functional divergence of insect CYP6B proteins: from specialist to generalist cytochrome P450
X Li, J Baudry, MR Berenbaum, MA Schuler
Proceedings of the National Academy of Sciences 101 (9), 2939-2944, 2004
3182004
Classical force field parameters for the heme prosthetic group of cytochrome c
F Autenrieth, E Tajkhorshid, J Baudry, Z Luthey‐Schulten
Journal of computational chemistry 25 (13), 1613-1622, 2004
2272004
Supercomputer-based ensemble docking drug discovery pipeline with application to COVID-19
A Acharya, R Agarwal, MB Baker, J Baudry, D Bhowmik, S Boehm, ...
Journal of chemical information and modeling 60 (12), 5832-5852, 2020
1582020
Oligomerization and fibril assembly of the amyloid-β protein
AE Roher, J Baudry, MO Chaney, YM Kuo, WB Stine, MR Emmerling
Biochimica et Biophysica Acta (BBA)-Molecular Basis of Disease 1502 (1), 31-43, 2000
1532000
Molecular dynamics study of the nature and origin of retinal's twisted structure in bacteriorhodopsin
E Tajkhorshid, J Baudry, K Schulten, S Suhai
Biophysical Journal 78 (2), 683-693, 2000
1362000
Molecular dynamics study of bacteriorhodopsin and the purple membrane
J Baudry, E Tajkhorshid, F Molnar, J Phillips, K Schulten
The Journal of Physical Chemistry B 105 (5), 905-918, 2001
1322001
Molecular basis for the subtype discrimination of the estrogen receptor-β-selective ligand, diarylpropionitrile
J Sun, J Baudry, JA Katzenellenbogen, BS Katzenellenbogen
Molecular endocrinology 17 (2), 247-258, 2003
1312003
A survey of aspartate− phenylalanine and glutamate− phenylalanine interactions in the protein data bank: Searching for anion− π pairs
V Philip, J Harris, R Adams, D Nguyen, J Spiers, J Baudry, EE Howell, ...
Biochemistry 50 (14), 2939-2950, 2011
1302011
Evidence for osteocalcin binding and activation of GPRC6A in β-cells
M Pi, K Kapoor, R Ye, SK Nishimoto, JC Smith, J Baudry, LD Quarles
Endocrinology 157 (5), 1866-1880, 2016
1192016
Reviving antibiotics: efflux pump inhibitors that interact with AcrA, a membrane fusion protein of the AcrAB-TolC multidrug efflux pump
N Abdali, JM Parks, KM Haynes, JL Chaney, AT Green, D Wolloscheck, ...
ACS infectious diseases 3 (1), 89-98, 2017
1092017
Arabidopsis thaliana NIP7;1: An Anther-Specific Boric Acid Transporter of the Aquaporin Superfamily Regulated by an Unusual Tyrosine in Helix 2 of the Transport†…
T Li, WG Choi, IS Wallace, J Baudry, DM Roberts
Biochemistry 50 (31), 6633-6641, 2011
892011
Ensemble docking in drug discovery: how many protein configurations from molecular dynamics simulations are needed to reproduce known ligand binding?
W Evangelista Falcon, SR Ellingson, JC Smith, J Baudry
The Journal of Physical Chemistry B 123 (25), 5189-5195, 2019
882019
Key role of active-site water molecules in bacteriorhodopsin proton-transfer reactions
AN Bondar, J Baudry, S Suhai, S Fischer, JC Smith
The Journal of Physical Chemistry B 112 (47), 14729-14741, 2008
822008
Multi-conformer ensemble docking to difficult protein targets
SR Ellingson, Y Miao, J Baudry, JC Smith
The Journal of Physical Chemistry B 119 (3), 1026-1034, 2015
792015
Common active site architecture and binding strategy of four phenylpropanoid P450s from Arabidopsis thaliana as revealed by molecular modeling
S Rupasinghe, J Baudry, MA Schuler
Protein Engineering 16 (10), 721-731, 2003
782003
Molecular docking of substrates and inhibitors in the catalytic site of CYP6B1, an insect cytochrome P450 monooxygenase
J Baudry, W Li, L Pan, MR Berenbaum, MA Schuler
Protein Engineering 16 (8), 577-587, 2003
782003
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